1JBY CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT LOW PH date
authors Hanson, G.T., McAnaney, T.B., Park, E.S., Rendell, M.E.P., Yarbrough, D.K., Chu, S., Xi, L., Boxer, S.G., Montrose, M.H., Remington, S.J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand CRO enzyme
related structures by homologous chain: 1QYO, 1RMO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGreen fluorescent protein variants as ratiometric dual emission pH sensors. 1. Structural characterization and preliminary application., Hanson GT, McAnaney TB, Park ES, Rendell ME, Yarbrough DK, Chu S, Xi L, Boxer SG, Montrose MH, Remington SJ, Biochemistry 2002 Dec 31;41(52):15477-88. PMID:12501176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1jby.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1JBY
  • CSU: Contacts of Structural Units for 1JBY
  • Likely Quarternary Molecular Structure file(s) for 1JBY
  • Structure Factors (131 Kb)
  • Retrieve 1JBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JBY from S2C, [Save to disk]
  • Re-refined 1jby structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JBY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JBY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jbya_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jby_A] [1jby]
  • SWISS-PROT database: [P42212]
  • Domain organization of [GFP_AEQVI] by SWISSPFAM
  • Other resources with information on 1JBY
  • Community annotation for 1JBY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1JBY from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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