1JNB	Viral Protein	date	Jul 23, 2001
title	Connector Protein From Bacteriophage Phi29
authors	A.A.Simpson, P.G.Leiman, Y.Tao, Y.He, M.O.Badasso, P.J.Jardine, D.L.Anderson, M.G.Rossmann
compound		source
Molecule: Upper Collar Protein Chain: A, B, C, D, E, F, G, H, I, J, K, L Synonym: Connector Protein Engineered: Yes		Organism_scientific: Bacillus Phage Phi29 Organism_taxid: 10756 Gene: 10 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppc28d1
symmetry	Space Group: C 1 2 1	R_factor 0.284 R_Free 0.301
crystal cell	length a length b length c angle alpha angle beta angle gamma 177.160 169.240 185.440 90.00 114.10 90.00
method	X-Ray Diffraction	resolution	3.20 Å
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Structure determination of the head-tail connector of bacteriophage phi29., Simpson AA, Leiman PG, Tao Y, He Y, Badasso MO, Jardine PJ, Anderson DL, Rossmann MG, Acta Crystallogr D Biol Crystallogr. 2001 Sep;57(Pt 9):1260-9. Epub 2001, Aug 23. PMID:11526317

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (510 Kb) [Save to disk] Biological Unit Coordinates (1jnb.pdb1.gz) 502 Kb CSU: Contacts of Structural Units for 1JNB Likely Quarternary Molecular Structure file(s) for 1JNB Structure Factors (637 Kb) Retrieve 1JNB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JNB from S2C, [Save to disk] Re-refined 1jnb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JNB in 3D

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Visual 3D analysis of 1JNB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JNB, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jnba_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jnbb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1jnbc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1jnbd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1jnbe_, region E [Jmol] [rasmolscript] [script source]     - Domain d1jnbf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1jnbg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1jnbh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1jnbi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1jnbj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1jnbk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1jnbl_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jnb_I] [1jnb_D] [1jnb_K] [1jnb_E] [1jnb_G] [1jnb] [1jnb_L] [1jnb_A] [1jnb_B] [1jnb_J] [1jnb_H] [1jnb_C] [1jnb_F] SWISS-PROT database: [P04332] Domain organization of [VG10_BPPH2] by SWISSPFAM

Other resources with information on 1JNB

Community annotation for 1JNB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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