1JNP Immune System date Jul 24, 2001
title Crystal Structure Of Murine Tcl1 At 2.5 Resolution
authors J.M.Petock, I.Y.Torshin, Y.F.Wang, G.C.Dubois, C.M.Croce, R.W.Har I.T.Weber
compound source
Molecule: T-Cell Leukemialymphoma Protein 1a
Chain: A, B
Synonym: P14 Tcl1 Protein, Tcl1 Oncogene, Tcl-1 Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.323 115.911 37.945 90.00 115.15 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of murine Tcl1 at 2.5 A resolution and implications for the TCL oncogene family., Petock JM, Torshin IY, Wang YF, Du Bois GC, Croce CM, Harrison RW, Weber IT, Acta Crystallogr D Biol Crystallogr 2001 Nov;57(Pt 11):1545-51. PMID:11679718
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1jnp.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 1JNP
  • Likely Quarternary Molecular Structure file(s) for 1JNP
  • Structure Factors (195 Kb)
  • Retrieve 1JNP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JNP from S2C, [Save to disk]
  • Re-refined 1jnp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JNP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JNP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JNP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jnpa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jnpb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1jnp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jnp_A] [1jnp_B] [1jnp]
  • SWISS-PROT database: [P56280]
  • Domain organization of [TCL1A_MOUSE] by SWISSPFAM
  • Other resources with information on 1JNP
  • Community annotation for 1JNP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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