1JOI Electron Transport date Jun 09, 1997
title Structure Of Pseudomonas Fluorescens Holo Azurin
authors X.Lee, H.Ton-That, D.W.Zhu, J.Biesterfedlt, P.H.Lanthier, M.Yach T.Dahms, A.G.Szabo
compound source
Molecule: Azurin
Chain: A
Other_details: Holo Azurin
Organism_scientific: Pseudomonas Fluorescens Bv. A
Organism_taxid: 32035
Strain: Biotype A
Atcc: 13525
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.950 43.780 78.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand CU enzyme
related structures by homologous chain: 1XB8, 3AZU
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceCrystallization and preliminary crystallographic studies of the crystals of the azurin Pseudomonas fluorescens., Zhu DW, Dahms T, Willis K, Szabo AG, Lee X, Arch Biochem Biophys 1994 Feb 1;308(2):469-70. PMID:8109977
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1joi.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 1JOI
  • CSU: Contacts of Structural Units for 1JOI
  • Likely Quarternary Molecular Structure file(s) for 1JOI
  • Structure Factors (54 Kb)
  • Retrieve 1JOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JOI from S2C, [Save to disk]
  • Re-refined 1joi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JOI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JOI, from MSDmotif at EBI
  • Genome occurence of 1JOI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1joi__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1joi_A] [1joi]
  • SWISS-PROT database: [P80546]
  • Domain organization of [AZUR_PSEFA] by SWISSPFAM
  • Other resources with information on 1JOI
  • Community annotation for 1JOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1JOI from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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