1JSN Viral Protein date Aug 17, 2001
title Structure Of Avian H5 Haemagglutinin Complexed With Lsta Rec Analog
authors Y.Ha, D.J.Stevens, J.J.Skehel, D.C.Wiley
compound source
Molecule: Haemagglutinin (Ha1 Chain)
Chain: A
Fragment: Residues 1-325
Other_details: Auto Cleaved Fragment Of N-Terminus
Organism_scientific: Influenza A Virus
Organism_taxid: 11320
Strain: Aducksingapore397

Molecule: Haemagglutinin (Ha2 Chain)
Chain: B
Fragment: Residues 1-176
Other_details: Auto Cleaved Fragment Of C-Terminus

Organism_scientific: Influenza A Virus
Organism_taxid: 11320
Strain: Aducksingapore397
symmetry Space Group: H 3 2
R_factor 0.240 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.626 131.626 254.110 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand GAL, NAG, SIA enzyme
related structures by homologous chain: 1JSO
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceX-ray structures of H5 avian and H9 swine influenza virus hemagglutinins bound to avian and human receptor analogs., Ha Y, Stevens DJ, Skehel JJ, Wiley DC, Proc Natl Acad Sci U S A 2001 Sep 25;98(20):11181-6. PMID:11562490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (1jsn.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1JSN
  • CSU: Contacts of Structural Units for 1JSN
  • Likely Quarternary Molecular Structure file(s) for 1JSN
  • Retrieve 1JSN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JSN from S2C, [Save to disk]
  • View 1JSN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JSN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JSN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jsna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jsnb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jsn_A] [1jsn_B] [1jsn]
  • SWISS-PROT database: [A5Z226]
  • Domain organization of [A5Z226_I97A2] by SWISSPFAM
  • Other resources with information on 1JSN
  • Community annotation for 1JSN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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