1JSV Transferase date Aug 19, 2001
title The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In Complex [(6-Amino-4-Pyrimidinyl)Amino]Benzenesulfonamide
authors K.D.Watenpaugh, L.C.Kelley
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: Cdk2, P33 Protein Kinase
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: High-Five Insect Cells
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.032 72.058 72.197 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand U55 enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1PW2, 1PXO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe cyclin-dependent kinases cdk2 and cdk5 act by a random, anticooperative kinetic mechanism., Clare PM, Poorman RA, Kelley LC, Watenpaugh KD, Bannow CA, Leach KL, J Biol Chem 2001 Dec 21;276(51):48292-9. PMID:11604388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1jsv.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1JSV
  • CSU: Contacts of Structural Units for 1JSV
  • Likely Quarternary Molecular Structure file(s) for 1JSV
  • Retrieve 1JSV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JSV from S2C, [Save to disk]
  • View 1JSV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JSV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JSV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jsva_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jsv] [1jsv_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1JSV: [S_TKc ] by SMART
  • Other resources with information on 1JSV
  • Community annotation for 1JSV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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