1JV2	Cell Adhesion	date	Aug 28, 2001
title	Crystal Structure Of The Extracellular Segment Of Integrin A
authors	J.P.Xiong, T.Stehle, B.Diefenbach, R.Zhang, R.Dunker, D.Scott, A.Joachimiak, S.L.Goodman, M.A.Arnaout
compound		source
Molecule: Integrin, Alpha V Chain: A Fragment: Residues 31-987 Synonym: Vitronectin Receptor, Alpha Polypeptide, Antigen C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Platelet Membrane Glycoprotein Iiia Beta Subunit Chain: B Fragment: Residues 27-718 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 32 2 1	R_factor 0.255 R_Free 0.335
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.000 130.000 307.300 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	CA, NAG, NDG	enzyme
note	1JV2 (Molecule of the Month:pdb134)
Gene Ontology	Chain Function Process Component A B smooth muscle cell migration...
Primary reference	Crystal structure of the extracellular segment of integrin alpha Vbeta3., Xiong JP, Stehle T, Diefenbach B, Zhang R, Dunker R, Scott DL, Joachimiak A, Goodman SL, Arnaout MA, Science 2001 Oct 12;294(5541):339-45. PMID:11546839

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk] Biological Unit Coordinates (1jv2.pdb1.gz) 233 Kb LPC: Ligand-Protein Contacts for 1JV2 CSU: Contacts of Structural Units for 1JV2 Likely Quarternary Molecular Structure file(s) for 1JV2 Retrieve 1JV2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JV2 from S2C, [Save to disk]

View 1JV2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JV2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JV2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jv2a4, region A:1-438 [Jmol] [rasmolscript] [script source]     - Domain d1jv2a1, region A:439-598 [Jmol] [rasmolscript] [script source]     - Domain d1jv2a2, region A:599-737 [Jmol] [rasmolscript] [script source]     - Domain d1jv2a3, region A:738-956 [Jmol] [rasmolscript] [script source]     - Domain d1jv2b2, region B:107-354 [Jmol] [rasmolscript] [script source]     - Domain d1jv2b4, region B:532-562 [Jmol] [rasmolscript] [script source]     - Domain d1jv2b1, region B:55-106,B:355-434 [Jmol] [rasmolscript] [script source]     - Domain d1jv2b5, region B:563-605 [Jmol] [rasmolscript] [script source]     - Domain d1jv2b3, region B:606-690 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jv2_A] [1jv2_B] [1jv2] SWISS-PROT database: [P06756] [P05106] Belongs to the integrin (integrin) family according to TCDB. Domain organization of [ITAV_HUMAN] [ITB3_HUMAN] by SWISSPFAM Domains found in 1JV2: [INB] [Int_alpha] [Integrin_B_tail] [PSI] [VWA ] by SMART

Other resources with information on 1JV2

Community annotation for 1JV2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1JV2 from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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