1K8T Crystal structure of the adenylyl cyclase domain of anthrax edema factor (EF) date
authors Drum, C.L., Yan, S.Z., Bard, J., Shen, Y.Q., Lu, D., Soelaiman, S., Grabarek, Z., Bohm, A., Tang, W.J.
compound source
symmetry
R_factor
R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand NI, SO4 enzyme
note 1K8T (Molecule of the Month:pdb28)
related structures by homologous chain: 1K90
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the activation of anthrax adenylyl cyclase exotoxin by calmodulin., Drum CL, Yan SZ, Bard J, Shen YQ, Lu D, Soelaiman S, Grabarek Z, Bohm A, Tang WJ, Nature 2002 Jan 24;415(6870):396-402. PMID:11807546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1k8t.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (1k8t.pdb2.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1K8T
  • CSU: Contacts of Structural Units for 1K8T
  • Likely Quarternary Molecular Structure file(s) for 1K8T
  • Structure Factors (192 Kb)
  • Retrieve 1K8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K8T from S2C, [Save to disk]
  • Re-refined 1k8t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1K8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1K8T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K8T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k8ta_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k8t] [1k8t_A]
  • SWISS-PROT database: [P40136]
  • Domain organization of [CYAA_BACAN] by SWISSPFAM
    • Other resources with information on 1K8T
  • Community annotation for 1K8T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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