1KAK Hydrolase date Nov 02, 2001
title Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
authors Z.Jia, Q.Ye, A.N.Dinaut, Q.Wang, D.Waddleton, P.Payette, C.Ramacha B.Kennedy, G.Hum, S.D.Taylor
compound source
Molecule: Protein-Tyrosine Phosphatase, Non-Receptor Type 1
Chain: A
Synonym: Protein-Tyrosine Phosphatase 1b
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.189 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.516 87.516 106.287 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand FNP BindingDB enzyme Hydrolase E.C.3.1.3.48 BRENDA
related structures by homologous chain: 1NWL, 1XBO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of protein tyrosine phosphatase 1B in complex with inhibitors bearing two phosphotyrosine mimetics., Jia Z, Ye Q, Dinaut AN, Wang Q, Waddleton D, Payette P, Ramachandran C, Kennedy B, Hum G, Taylor SD, J Med Chem 2001 Dec 20;44(26):4584-94. PMID:11741477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1kak.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1KAK
  • CSU: Contacts of Structural Units for 1KAK
  • Likely Quarternary Molecular Structure file(s) for 1KAK
  • Structure Factors (108 Kb)
  • Retrieve 1KAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KAK from S2C, [Save to disk]
  • Re-refined 1kak structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KAK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KAK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kaka_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kak] [1kak_A]
  • SWISS-PROT database: [P18031]
  • Domain organization of [PTN1_HUMAN] by SWISSPFAM
  • Domains found in 1KAK: [PTPc] [PTPc_DSPc ] by SMART
  • Other resources with information on 1KAK
  • Community annotation for 1KAK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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