1KQ3 Oxidoreductase date Jan 03, 2002
title Crystal Structure Of A Glycerol Dehydrogenase (Tm0423) From Maritima At 1.5 A Resolution
authors I.A.Wilson, M.D.Miller, Joint Center For Structural Genomics (
compound source
Molecule: Glycerol Dehydrogenase
Chain: A
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Tm0423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dl41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmh1
symmetry Space Group: I 4 2 2
R_factor 0.173 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.730 105.730 135.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CL, TRS, ZN enzyme
note 1KQ3 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline., Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC, Proc Natl Acad Sci U S A 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22. PMID:12193646
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1kq3.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (1kq3.pdb2.gz) 468 Kb
  • LPC: Ligand-Protein Contacts for 1KQ3
  • CSU: Contacts of Structural Units for 1KQ3
  • Likely Quarternary Molecular Structure file(s) for 1KQ3
  • Structure Factors (1578 Kb)
  • Retrieve 1KQ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KQ3 from S2C, [Save to disk]
  • Re-refined 1kq3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KQ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KQ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1KQ3 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KQ3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kq3a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kq3_A] [1kq3]
  • SWISS-PROT database: [Q9WYQ4]
  • Domain organization of [GLDA_THEMA] by SWISSPFAM
  • Other resources with information on 1KQ3
  • Community annotation for 1KQ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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