1KSI Oxidoreductase date Jul 20, 1996
title Crystal Structure Of A Eukaryotic (Pea Seedling) Copper-Cont Amine Oxidase At 2.2a Resolution
authors M.C.J.Wilce, V.Kumar, H.C.Freeman, J.M.Guss
compound source
Molecule: Copper Amine Oxidase
Chain: A, B
Ec: 1.4.3.6
 Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.370 114.640 199.940 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CU, MN, NAG, TPQ enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
related structures by homologous chain: 1W2Z
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a eukaryotic (pea seedling) copper-containing amine oxidase at 2.2 A resolution., Kumar V, Dooley DM, Freeman HC, Guss JM, Harvey I, McGuirl MA, Wilce MC, Zubak VM, Structure 1996 Aug 15;4(8):943-55. PMID:8805580
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (1ksi.pdb1.gz) 217 Kb
  • LPC: Ligand-Protein Contacts for 1KSI
  • CSU: Contacts of Structural Units for 1KSI
  • Likely Quarternary Molecular Structure file(s) for 1KSI
  • Retrieve 1KSI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KSI from S2C, [Save to disk]
    • View 1KSI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KSI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KSI, from MSDmotif at EBI
  • Genome occurence of 1KSI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ksia1, region A:207-647 [Jmol] [rasmolscript] [script source]
        - Domain d1ksia2, region A:6-98 [Jmol] [rasmolscript] [script source]
        - Domain d1ksia3, region A:99-206 [Jmol] [rasmolscript] [script source]
        - Domain d1ksib1, region B:207-647 [Jmol] [rasmolscript] [script source]
        - Domain d1ksib2, region B:6-98 [Jmol] [rasmolscript] [script source]
        - Domain d1ksib3, region B:99-206 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ksi_A] [1ksi_B] [1ksi]
  • SWISS-PROT database: [Q43077]
  • Domain organization of [AMO_PEA] by SWISSPFAM
    • Other resources with information on 1KSI
  • Community annotation for 1KSI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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