1L8D Replication date Mar 20, 2002
title Rad50 Coiled-Coil Zn Hook
authors K.P.Hopfner, J.A.Tainer
compound source
Molecule: Dna Double-Strand Break Repair Rad50 Atpase
Chain: A, B
Fragment: Rad50 Coiled-Coil Fragment Containing The Cxxc Motif, Rad50 Molecular Hook;
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.958 77.868 53.330 90.00 91.55 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CIT, HG, PO4 enzyme
Primary referenceThe Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair., Hopfner KP, Craig L, Moncalian G, Zinkel RA, Usui T, Owen BA, Karcher A, Henderson B, Bodmer JL, McMurray CT, Carney JP, Petrini JH, Tainer JA, Nature 2002 Aug 1;418(6897):562-6. PMID:12152085
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1l8d.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1L8D
  • CSU: Contacts of Structural Units for 1L8D
  • Likely Quarternary Molecular Structure file(s) for 1L8D
  • Retrieve 1L8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L8D from S2C, [Save to disk]
  • View 1L8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L8D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1L8D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l8da_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1l8db_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1l8d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l8d_A] [1l8d_B] [1l8d]
  • SWISS-PROT database: [P58301]
  • Domain organization of [RAD50_PYRFU] by SWISSPFAM
  • Other resources with information on 1L8D
  • Community annotation for 1L8D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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