1L8R Transcription date Mar 21, 2002
title Structure Of The Retinal Determination Protein Dachshund Reveals A Dna-Binding Motif
authors S.S.Kim, R.Zhang, S.E.Braunstein, A.Joachimiak, A.Cvekl, R.S.Hegde
compound source
Molecule: Dachshund
Chain: A, B
Fragment: Dachbox-N
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.237 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.797 47.731 50.436 60.75 86.86 84.55
method X-Ray Diffractionresolution 1.65 Å
ligand MSE enzyme
note 1L8R is a representative structure
Primary referenceStructure of the retinal determination protein Dachshund reveals a DNA binding motif., Kim SS, Zhang RG, Braunstein SE, Joachimiak A, Cvekl A, Hegde RS, Structure (Camb) 2002 Jun;10(6):787-95. PMID:12057194
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1l8r.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (1l8r.pdb2.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 1L8R
  • CSU: Contacts of Structural Units for 1L8R
  • Likely Quarternary Molecular Structure file(s) for 1L8R
  • Retrieve 1L8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L8R from S2C, [Save to disk]
  • View 1L8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L8R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1L8R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l8ra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1l8rb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1l8r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l8r_B] [1l8r] [1l8r_A]
  • SWISS-PROT database: [Q9UI36]
  • Domain organization of [DACH1_HUMAN] by SWISSPFAM
  • Other resources with information on 1L8R
  • Community annotation for 1L8R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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