1LEO	Transferase	date	May 22, 1996
title	P100s Nucleoside Diphosphate Kinase
authors	J.Janin, Y.Xu, M.Veron
compound		source
Molecule: Nucleoside Diphosphate Kinase Chain: A Synonym: Ndp Kinase Ec: 2.7.4.6 Engineered: Yes Mutation: Yes		Organism_scientific: Dictyostelium Discoideum Organism_taxid: 44689 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 63 2 2	R_factor 0.193 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.044 75.044 105.200 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand		enzyme	Transferase E.C.2.7.4.6 BRENDA
related structures	by homologous chain: 1B4S, 1HIY
Gene Ontology	Chain Function Process Component A
Primary reference	Nucleoside diphosphate kinase. Investigation of the intersubunit contacts by site-directed mutagenesis and crystallography., Karlsson A, Mesnildrey S, Xu Y, Morera S, Janin J, Veron M, J Biol Chem 1996 Aug 16;271(33):19928-34. PMID:8702707

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (1leo.pdb1.gz) 139 Kb CSU: Contacts of Structural Units for 1LEO Likely Quarternary Molecular Structure file(s) for 1LEO Retrieve 1LEO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LEO from S2C, [Save to disk]

View 1LEO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LEO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LEO, from MSDmotif at EBI Genome occurence of 1LEO's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1leo__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1leo] [1leo_A] SWISS-PROT database: [P22887] Domain organization of [NDKC_DICDI] by SWISSPFAM Domain found in 1LEO: [NDK ] by SMART

Other resources with information on 1LEO

Community annotation for 1LEO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---