1LJ5 Blood Clotting date Apr 19, 2002
title 1.8a Resolution Structure Of Latent Plasminogen Activator In 1(Pai-1)
authors P.E.Stein, K.Baek
compound source
Molecule: Plasminogen Activator Inhibitor-1
Chain: A
Synonym: Pai-1, Endothelial Plasminogen Activator Inhibitor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Serpine1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11c
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.574 46.885 63.048 90.00 106.54 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACY, DMS enzyme
related structures by homologous chain: 1A7C
Gene
Ontology
ChainFunctionProcessComponent
A
  • negative regulation of endop...
  • negative regulation of smoot...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1lj5.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 1LJ5
  • CSU: Contacts of Structural Units for 1LJ5
  • Likely Quarternary Molecular Structure file(s) for 1LJ5
  • Structure Factors (425 Kb)
  • Retrieve 1LJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LJ5 from S2C, [Save to disk]
  • Re-refined 1lj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LJ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LJ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lj5a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lj5_A] [1lj5]
  • SWISS-PROT database: [P05121]
  • Domain organization of [PAI1_HUMAN] by SWISSPFAM
  • Domain found in 1LJ5: [SERPIN ] by SMART
  • Other resources with information on 1LJ5
  • Community annotation for 1LJ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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