1LUA Structure of methylene-tetrahydromethanopterin dehydrogenase from Methylobacterium extorquens AM1 complexed with NADP date
authors Ermler, U., Hagemeier, C.H., Roth, A., Demmer, U., Grabarse, W., Warkentin, E., Vorholt, J.A.
compound source
symmetry
R_factor
R_Free 0.2220000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand NAP enzyme
related structures by homologous chain: 1LU9
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of methylene-tetrahydromethanopterin dehydrogenase from methylobacterium extorquens AM1., Ermler U, Hagemeier CH, Roth A, Demmer U, Grabarse W, Warkentin E, Vorholt JA, Structure (Camb) 2002 Aug;10(8):1127-37. PMID:12176390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (1lua.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 1LUA
  • CSU: Contacts of Structural Units for 1LUA
  • Likely Quarternary Molecular Structure file(s) for 1LUA
  • Structure Factors (522 Kb)
  • Retrieve 1LUA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LUA from S2C, [Save to disk]
  • Re-refined 1lua structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1LUA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LUA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LUA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1luaa2, region A:2-97 [Jmol] [rasmolscript] [script source]
        - Domain d1luaa1, region A:98-288 [Jmol] [rasmolscript] [script source]
        - Domain d1luab2, region B:2-97 [Jmol] [rasmolscript] [script source]
        - Domain d1luab1, region B:98-288 [Jmol] [rasmolscript] [script source]
        - Domain d1luac2, region C:2-97 [Jmol] [rasmolscript] [script source]
        - Domain d1luac1, region C:98-288 [Jmol] [rasmolscript] [script source]
  • Fold representative 1lua from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lua_C] [1lua_B] [1lua] [1lua_A]
  • SWISS-PROT database: [P55818]
  • Domain organization of [MTDA_METEA] by SWISSPFAM
    • Other resources with information on 1LUA
  • Community annotation for 1LUA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1LUA from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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