1LV0	Signaling Protein	date	May 23, 2002
title	Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide
authors	Y.An, Y.Shao, C.Alory, J.Matteson, T.Sakisaka, W.Chen, R.A.Gibbs, I.A.Wilson, W.E.Balch
compound		source
Molecule: Rab Gdp Disossociation Inhibitor Alpha Chain: A Synonym: Rab Gdi Alpha, Gdi-1, Smg P25a Gdi Engineered: Yes		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet-11dhis
symmetry	Space Group: P 1 21 1	R_factor 0.196 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.230 42.861 89.104 90.00 103.53 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	GER, SO4	enzyme
related structures	by homologous chain: 1GND
Gene Ontology	Chain Function Process Component A GDP-dissociation inhibitor a... Rab GDP-dissociation inhibit... GTPase activator activity
Primary reference	Geranylgeranyl switching regulates GDI-Rab GTPase recycling., An Y, Shao Y, Alory C, Matteson J, Sakisaka T, Chen W, Gibbs RA, Wilson IA, Balch WE, Structure (Camb) 2003 Mar;11(3):347-57. PMID:12623022

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (1lv0.pdb1.gz) 78 Kb LPC: Ligand-Protein Contacts for 1LV0 CSU: Contacts of Structural Units for 1LV0 Likely Quarternary Molecular Structure file(s) for 1LV0 Structure Factors (421 Kb) Retrieve 1LV0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LV0 from S2C, [Save to disk] Re-refined 1lv0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1LV0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LV0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LV0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1lv0a1, region A:-1-291,A:389-431 [Jmol] [rasmolscript] [script source]     - Domain d1lv0a2, region A:292-388 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lv0_A] [1lv0] SWISS-PROT database: [P21856] Domain organization of [GDIA_BOVIN] by SWISSPFAM

Other resources with information on 1LV0

Community annotation for 1LV0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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