1LV3 Structural Genomics, Unknown Function date May 24, 2002
title Solution Nmr Structure Of Zinc Finger Protein Yacg From Esch Coli. Northeast Structural Genomics Consortium Target Et92.
authors T.A.Ramelot, J.R.Cort, A.A.Yee, A.Semesi, A.M.Edwards, C.H.Arrows M.A.Kennedy, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Hypothetical Protein Yacg
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yacg
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
ligand ZN enzyme
note 1LV3 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA topoisomerase (ATP-hydro...


    • Primary referenceNMR structure of the Escherichia coli protein YacG: a novel sequence motif in the zinc-finger family of proteins., Ramelot TA, Cort JR, Yee AA, Semesi A, Edwards AM, Arrowsmith CH, Kennedy MA, Proteins 2002 Nov 1;49(2):289-93. PMID:12211008
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk]
  • Biological Unit Coordinates (1lv3.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1LV3
  • CSU: Contacts of Structural Units for 1LV3
  • Original NMR restraints for 1LV3 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1LV3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LV3 from S2C, [Save to disk]
    • View 1LV3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LV3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LV3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lv3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lv3_A] [1lv3]
  • SWISS-PROT database: [P0A8H8]
  • Domain organization of [YACG_ECOLI] by SWISSPFAM
    • Other resources with information on 1LV3
  • Community annotation for 1LV3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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