1LXJ Structural Genomics, Unknown Function date Jun 05, 2002
title X-Ray Structure Of Ybl001c Northeast Structural Genomics (Ne Consortium Target Ytyst72
authors X.Tao, R.Khayat, D.Christendat, A.Savchenko, X.Xu, A.Edwards, C.H.Arrowsmith, L.Tong, Northeast Structural Genomics Consort (Nesg)
compound source
Molecule: Hypothetical 11.5kda Protein In Htb2-Nth2 Interge Region;
Chain: A
Synonym: Ybl001c
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41 2 2
R_factor 0.211 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.380 67.380 133.590 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of MTH1187 and its yeast ortholog YBL001c., Tao X, Khayat R, Christendat D, Savchenko A, Xu X, Goldsmith-Fischman S, Honig B, Edwards A, Arrowsmith CH, Tong L, Proteins 2003 Aug 15;52(3):478-80. PMID:12866058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1lxj.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 1LXJ
  • CSU: Contacts of Structural Units for 1LXJ
  • Likely Quarternary Molecular Structure file(s) for 1LXJ
  • Structure Factors (147 Kb)
  • Retrieve 1LXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LXJ from S2C, [Save to disk]
  • Re-refined 1lxj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LXJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LXJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lxja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lxj] [1lxj_A]
  • SWISS-PROT database: [P35195]
  • Domain organization of [ECM15_YEAST] by SWISSPFAM
  • Other resources with information on 1LXJ
  • Community annotation for 1LXJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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