1LY7 The solution structure of the the c-terminal domain of frataxin, the protein responsible for friedreich ataxia date
authors Musco, G., Stier, G., Kolmerer, B., Adinolfi, S., Martin, S., Frenkiel, T., Gibson, T., Pastore, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 15 Modelsresolution
note 1LY7 supersedes 1DLX
related structures by homologous chain: 1EKG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTowards a structural understanding of Friedreich's ataxia: the solution structure of frataxin., Musco G, Stier G, Kolmerer B, Adinolfi S, Martin S, Frenkiel T, Gibson T, Pastore A, Structure Fold Des 2000 Jul 15;8(7):695-707. PMID:10903947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (455 Kb) [Save to disk]
  • Biological Unit Coordinates (1ly7.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1LY7
  • Original NMR restraints for 1LY7 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1LY7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LY7 from S2C, [Save to disk]
  • View 1LY7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LY7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LY7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ly7a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ly7] [1ly7_A]
  • SWISS-PROT database: [Q16595]
  • Belongs to the frataxin (frataxin) family according to TCDB.
  • Domain organization of [FRDA_HUMAN] by SWISSPFAM
  • Domain found in 1LY7: [Frataxin_Cyay ] by SMART
  • Other resources with information on 1LY7
  • Community annotation for 1LY7 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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