1M0Z Blood Clotting date Jun 16, 2002
title Crystal Structure Of The Von Willebrand Factor Binding Domai Glycoprotein Ib Alpha
authors E.G.Huizinga, S.Tsuji, R.A.P.Romijn, M.E.Schiphorst, P.G.De Groo J.J.Sixma, P.Gros
compound source
Molecule: Glycoprotein Ib Alpha
Chain: A, B
Fragment: Von Willebrand Factor Binding Domain
Synonym: Platelet Glycoprotein Ib Alpha Chain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gp1ba
Expression_system: Mesocricetus Auratus
Expression_system_common: Golden Hamster
Expression_system_taxid: 10036
Expression_system_tissue: Kidney
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3.1
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.500 54.500 101.800 90.00 103.70 90.00
method X-Ray Diffractionresolution 1.85 Å
related structures by homologous chain: 1OOK, 1P9A
Primary referenceStructures of glycoprotein Ibalpha and its complex with von Willebrand factor A1 domain., Huizinga EG, Tsuji S, Romijn RA, Schiphorst ME, de Groot PG, Sixma JJ, Gros P, Science 2002 Aug 16;297(5584):1176-9. PMID:12183630
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1m0z.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (1m0z.pdb2.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1M0Z
  • Likely Quarternary Molecular Structure file(s) for 1M0Z
  • Structure Factors (559 Kb)
  • Retrieve 1M0Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M0Z from S2C, [Save to disk]
  • Re-refined 1m0z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M0Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M0Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M0Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m0za_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1m0zb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m0z_A] [1m0z_B] [1m0z]
  • SWISS-PROT database: [P07359]
  • Domain organization of [GP1BA_HUMAN] by SWISSPFAM
  • Domains found in 1M0Z: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
  • Other resources with information on 1M0Z
  • Community annotation for 1M0Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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