1M6Z Electron Transport date Jul 18, 2002
title Crystal Structure Of Reduced Recombinant Cytochrome C4 From Pseudomonas Stutzeri
authors A.Noergaard, P.Harris, S.Larsen, H.E.M.Christensen
compound source
Molecule: Cytochrome C4
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Pseudomonas Stutzeri
Organism_taxid: 316
Expression_system: Pseudomonas Putida
Expression_system_taxid: 303
Expression_system_strain: Paw340
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnm185
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.110 57.560 83.750 90.00 104.32 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand GOL, HEC, TRS enzyme
related structures by homologous chain: 1ETP, 1M70
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • electron transfer activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (1m6z.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (1m6z.pdb2.gz) 68 Kb
  • Biological Unit Coordinates (1m6z.pdb3.gz) 70 Kb
  • Biological Unit Coordinates (1m6z.pdb4.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1M6Z
  • CSU: Contacts of Structural Units for 1M6Z
  • Likely Quarternary Molecular Structure file(s) for 1M6Z
  • Structure Factors (1272 Kb)
  • Retrieve 1M6Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M6Z from S2C, [Save to disk]
  • Re-refined 1m6z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1M6Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M6Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1M6Z 1M6ZA 1M6ZB 1M6ZC 1M6ZD from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M6Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m6za1, region A:1-92 [Jmol] [rasmolscript] [script source]
        - Domain d1m6za2, region A:93-190 [Jmol] [rasmolscript] [script source]
        - Domain d1m6zb1, region B:1-92 [Jmol] [rasmolscript] [script source]
        - Domain d1m6zb2, region B:93-190 [Jmol] [rasmolscript] [script source]
        - Domain d1m6zc1, region C:1-92 [Jmol] [rasmolscript] [script source]
        - Domain d1m6zc2, region C:93-190 [Jmol] [rasmolscript] [script source]
        - Domain d1m6zd1, region D:1-92 [Jmol] [rasmolscript] [script source]
        - Domain d1m6zd2, region D:93-190 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m6z_C] [1m6z] [1m6z_A] [1m6z_D] [1m6z_B]
  • SWISS-PROT database: [Q52369]
  • Domain organization of [CYC4_PSEST] by SWISSPFAM
    • Other resources with information on 1M6Z
  • Community annotation for 1M6Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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