1M8W	Rna Binding Protein Rna	date	Jul 26, 2002
title	Crystal Structure Of The Pumilio-Homology Domain From Human In Complex With Nre1-19 Rna
authors	X.Wang, J.Mclachlan, P.D.Zamore, T.M.T.Hall
compound		source
Molecule: 5'-R(Pupupgpupapupapu)-3' Chain: C Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Drosophila Melanogaster;
Molecule: 5'-R(Pupgpupapupapu)-3' Chain: D Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Drosophila Melanogaster;
Molecule: 5'-R(Pupupgpupcpcpapg)-3' Chain: E Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Drosophila Melanogaster;
Molecule: 5'-R(Pupgpupcpcpapg)-3' Chain: F Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Drosophila Melanogaster;
Molecule: Pumilio 1 Chain: A, B Fragment: Pumilio-Homology Domain, Residues 828-1176 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptyb3
symmetry	Space Group: C 1 2 1	R_factor 0.224 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 262.730 37.730 82.520 90.00 102.95 90.00
method	X-Ray Diffraction	resolution	2.20 Å
related structures	by homologous chain: 1IB2, 1M8X
Gene Ontology	Chain Function Process Component A, B
Primary reference	Modular recognition of RNA by a human pumilio-homology domain., Wang X, McLachlan J, Zamore PD, Hall TM, Cell 2002 Aug 23;110(4):501-12. PMID:12202039

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk] Biological Unit Coordinates (1m8w.pdb1.gz) 66 Kb Biological Unit Coordinates (1m8w.pdb2.gz) 63 Kb CSU: Contacts of Structural Units for 1M8W Likely Quarternary Molecular Structure file(s) for 1M8W Structure Factors (507 Kb) Retrieve 1M8W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M8W from S2C, [Save to disk] Re-refined 1m8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1M8W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1M8W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M8W, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m8wa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1m8wb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m8w_E] [1m8w_D] [1m8w_A] [1m8w_B] [1m8w] [1m8w_C] [1m8w_F] SWISS-PROT database: [Q14671] Domain organization of [PUM1_HUMAN] by SWISSPFAM Domain found in 1M8W: [Pumilio ] by SMART

Other resources with information on 1M8W

Community annotation for 1M8W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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