1MAB	Hydrolase	date	Aug 06, 1998
title	Rat Liver F1-Atpase
authors	M.A.Bianchet, L.M.Amzel
compound		source
Molecule: Protein (F1-Atpase Alpha Chain) Chain: A Fragment: Alpha Chain Ec: 3.6.1.34		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Organ: Liver
Molecule: Protein (F1-Atpase Beta Chain) Chain: B Fragment: Beta Chain Ec: 3.6.1.34		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Organ: Liver
Molecule: Protein (F1-Atpase Gamma Chain) Chain: G Fragment: Gamma Chain Ec: 3.6.1.34		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Organ: Liver
symmetry	Space Group: H 3 2	R_factor 0.217 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 143.670 143.670 361.150 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	ADP, ATP, MG, PO4	enzyme	Hydrolase E.C.3.6.1.34 BRENDA
related structures	by homologous chain: 1E1Q, 1OHH
Gene Ontology	Chain Function Process Component A B G
Primary reference	The 2.8-A structure of rat liver F1-ATPase: configuration of a critical intermediate in ATP synthesis/hydrolysis., Bianchet MA, Hullihen J, Pedersen PL, Amzel LM, Proc Natl Acad Sci U S A 1998 Sep 15;95(19):11065-70. PMID:9736690

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk] Biological Unit Coordinates (1mab.pdb1.gz) 463 Kb LPC: Ligand-Protein Contacts for 1MAB CSU: Contacts of Structural Units for 1MAB Likely Quarternary Molecular Structure file(s) for 1MAB Retrieve 1MAB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MAB from S2C, [Save to disk]

View 1MAB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MAB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MAB, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1maba2, region A:10-94 [Jmol] [rasmolscript] [script source]     - Domain d1maba1, region A:380-510 [Jmol] [rasmolscript] [script source]     - Domain d1maba3, region A:95-379 [Jmol] [rasmolscript] [script source]     - Domain d1mabb2, region B:1-81 [Jmol] [rasmolscript] [script source]     - Domain d1mabb1, region B:358-477 [Jmol] [rasmolscript] [script source]     - Domain d1mabb3, region B:82-357 [Jmol] [rasmolscript] [script source]     - Domain d1mabg_, region G [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mab_B] [1mab_A] [1mab] [1mab_G] SWISS-PROT database: [P15999] [P10719] [P35435] Domain organization of [ATPA_RAT] [ATPB_RAT] [ATPG_RAT] by SWISSPFAM Domain found in 1MAB: [AAA ] by SMART

Other resources with information on 1MAB

Community annotation for 1MAB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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