1MFG	Signaling Protein	date	Aug 10, 2002
title	The Structure Of Erbin Pdz Domain Bound To The Carboxy-Termi Of The Erbb2 Receptor
authors	G.Birrane, J.Chung, J.A.Ladias
compound		source
Molecule: Erb-B2 Interacting Protein Chain: A Fragment: Pdz Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-Kt
Molecule: Erb-B2 Carboxyl-Terminal Fragment Chain: B Fragment: Peptide Eylgldvpv Engineered: Yes		Synthetic: Yes Other_details: Peptide Synthesized Chemically
symmetry	Space Group: P 1 21 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 26.605 57.417 30.439 90.00 100.59 90.00
method	X-Ray Diffraction	resolution	1.25 Å
related structures	by homologous chain: 1MFL
Gene Ontology	Chain Function Process Component A
Primary reference	Novel mode of ligand recognition by the Erbin PDZ domain., Birrane G, Chung J, Ladias JA, J Biol Chem 2003 Jan 17;278(3):1399-402. PMID:12444095

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (1mfg.pdb1.gz) 39 Kb CSU: Contacts of Structural Units for 1MFG Likely Quarternary Molecular Structure file(s) for 1MFG Structure Factors (238 Kb) Retrieve 1MFG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MFG from S2C, [Save to disk] Re-refined 1mfg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1MFG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MFG

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1MFG 1MFGA 1MFGB from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MFG, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mfga_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mfg_A] [1mfg_B] [1mfg] SWISS-PROT database: [P04626] [Q96RT1] Domain organization of [ERBB2_HUMAN] [LAP2_HUMAN] by SWISSPFAM Domain found in 1MFG: [PDZ ] by SMART

Other resources with information on 1MFG

Community annotation for 1MFG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---