1MJD Signaling Protein date Aug 27, 2002
title Structure Of N-Terminal Domain Of Human Doublecortin
authors M.H.Kim, T.Cierpicki, U.Derewenda, D.Krowarsch, Y.Feng, Y.Devedji Z.Dauter, C.A.Walsh, J.Otlewski, J.H.Bushweller, Z.S.Derewenda
compound source
Molecule: Doublecortin
Chain: A
Fragment: N-Terminal Domain, Residues (45-150)
Synonym: Lissencephalin-X, Lis-X, Doublin
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dcx
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Gstuni1
methodSolution NMR
related structures by homologous chain: 1UF0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe DCX-domain tandems of doublecortin and doublecortin-like kinase., Kim MH, Cierpicki T, Derewenda U, Krowarsch D, Feng Y, Devedjiev Y, Dauter Z, Walsh CA, Otlewski J, Bushweller JH, Derewenda ZS, Nat Struct Biol 2003 May;10(5):324-33. PMID:12692530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (604 Kb) [Save to disk]
  • Biological Unit Coordinates (1mjd.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 1MJD
  • Original NMR restraints for 1MJD from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1MJD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MJD from S2C, [Save to disk]
    • View 1MJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MJD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MJD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mjda_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mjd_A] [1mjd]
  • SWISS-PROT database: [O43602]
  • Domain organization of [DCX_HUMAN] by SWISSPFAM
  • Domain found in 1MJD: [DCX ] by SMART
    • Other resources with information on 1MJD
  • Community annotation for 1MJD at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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