OCA Atlas for 1MLC

1MLC

Complex (Antibody Antigen)

date

Mar 10, 1995

title

Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg- White Lysozyme Complexed With Lysozyme

authors

B.C.Braden, H.Souchon, J.L.Eisele, G.A.Bentley, T.N.Bhat, J.Navaza, R.J.Poljak

compound

source

Molecule: Igg1-Kappa D44.1 Fab (Light Chain)
Chain: A, C
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Igg1-Kappa D44.1 Fab (Heavy Chain)
Chain: B, D
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Hen Egg White Lysozyme
Chain: E, F
Engineered: Yes

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

symmetry

Space Group: P 21 21 21

R_factor

R_Free

0.282

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
99.700	167.300	84.700	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

2.50 Å

note

1MLC (Molecule of the Month:pdb136)

related structures

by homologous chain: 1BFV, 1C5B, 1MFD, 1MHH, 1MLB

Gene
Ontology

Chain	Function	Process	Component
A, C
F, E

Primary reference

Three-dimensional structures of the free and the antigen-complexed Fab from monoclonal anti-lysozyme antibody D44.1., Braden BC, Souchon H, Eisele JL, Bentley GA, Bhat TN, Navaza J, Poljak RJ, J Mol Biol 1994 Nov 4;243(4):767-81. PMID:7966295

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]

Biological Unit Coordinates (1mlc.pdb1.gz) 91 Kb

Biological Unit Coordinates (1mlc.pdb2.gz) 91 Kb

CSU: Contacts of Structural Units for 1MLC

Likely Quarternary Molecular Structure file(s) for 1MLC

Retrieve 1MLC in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1MLC from S2C, [Save to disk]

View 1MLC in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MLC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1MLC, from MSDmotif at EBI

Genome occurence of 1MLC's fold from GeneCensus

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1mlca1, region A:1-108 [Jmol] [rasmolscript] [script source]
- Domain d1mlca2, region A:109-214 [Jmol] [rasmolscript] [script source]
- Domain d1mlcb1, region B:1-118 [Jmol] [rasmolscript] [script source]
- Domain d1mlcb2, region B:119-218 [Jmol] [rasmolscript] [script source]
- Domain d1mlcc1, region C:1-108 [Jmol] [rasmolscript] [script source]
- Domain d1mlcc2, region C:109-214 [Jmol] [rasmolscript] [script source]
- Domain d1mlcd1, region D:1-118 [Jmol] [rasmolscript] [script source]
- Domain d1mlcd2, region D:119-218 [Jmol] [rasmolscript] [script source]
- Domain d1mlce_, region E [Jmol] [rasmolscript] [script source]
- Domain d1mlcf_, region F [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mlc_A] [1mlc_B] [1mlc_C] [1mlc_D] [1mlc] [1mlc_E] [1mlc_F]

SWISS-PROT database: [P01837] [P00698]

Domain organization of [IGKC_MOUSE] [LYSC_CHICK] by SWISSPFAM

Domains found in 1MLC: [IG_like] [IGv] [LYZ1 ] by SMART

Other resources with information on 1MLC

Community annotation for 1MLC at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1MLC from the Database of Macromolecular Movements.

Images from IMB Jena Image Library of Biological Macromolecules.

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