1MMS	Ribosome	date	Apr 14, 1999
title	Crystal Structure Of The Ribosomal Protein L11-Rna Complex
authors	B.T.Wimberly, R.Guymon, J.P.Mccutcheon, S.W.White, V.Ramakrishna
compound		source
Molecule: 23s Ribosomal Rna Chain: C, D Fragment: Residues 1051-1108 Engineered: Yes Mutation: Yes Other_details: Covalent Mercury Ligand At U1061		Synthetic: Yes Other_details: In Vitro Transcribed Rrna From Thermotoga Ma
Molecule: Protein (Ribosomal Protein L11) Chain: A, B Engineered: Yes Other_details: Covalent Mercury Ligand At Cys39		Organism_scientific: Thermotoga Maritima Organism_taxid: 2336 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet13a Other_details: Recombinant Protein
symmetry	Space Group: P 21 21 21	R_factor 0.219 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.890 84.260 155.510 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.57 Å
ligand	CD, MG, MMC	enzyme
related structures	by homologous chain: 1HC8
Gene Ontology	Chain Function Process Component A, B
Primary reference	A detailed view of a ribosomal active site: the structure of the L11-RNA complex., Wimberly BT, Guymon R, McCutcheon JP, White SW, Ramakrishnan V, Cell 1999 May 14;97(4):491-502. PMID:10338213

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (1mms.pdb1.gz) 49 Kb Biological Unit Coordinates (1mms.pdb2.gz) 40 Kb LPC: Ligand-Protein Contacts for 1MMS CSU: Contacts of Structural Units for 1MMS Likely Quarternary Molecular Structure file(s) for 1MMS Structure Factors (377 Kb) Retrieve 1MMS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MMS from S2C, [Save to disk] Re-refined 1mms structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1MMS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MMS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MMS, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mmsa1, region A:71-140 [Jmol] [rasmolscript] [script source]     - Domain d1mmsa2, region A:8-70 [Jmol] [rasmolscript] [script source]     - Domain d1mmsb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mms_B] [1mms] [1mms_C] [1mms_A] [1mms_D] SWISS-PROT database: [P29395] Domain organization of [RL11_THEMA] by SWISSPFAM Domain found in 1MMS: [RL11 ] by SMART

Other resources with information on 1MMS

Community annotation for 1MMS at PDBWiki (http://pdbwiki.org)

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