1MSD Oxidoreductase (Superoxide Acceptor) date Nov 10, 1992
title Comparison Of The Crystal Structures Of Genetically Engineer Manganese Superoxide Dismutase And Manganese Superoxide Dis From Thermus Thermophilus. Differences In Dimer-Dimer Inter
authors J.Sussman, U.G.Wagner, K.A.Pattridge, M.L.Ludwig
compound source
Molecule: Manganese Superoxide Dismutase
Chain: A, B
Ec: 1.15.1.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.207 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.800 74.100 68.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand MN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
note 1MSD (Molecule of the Month:pdb94)
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceComparison of the crystal structures of genetically engineered human manganese superoxide dismutase and manganese superoxide dismutase from Thermus thermophilus: differences in dimer-dimer interaction., Wagner UG, Pattridge KA, Ludwig ML, Stallings WC, Werber MM, Oefner C, Frolow F, Sussman JL, Protein Sci 1993 May;2(5):814-25. PMID:8495200
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1msd.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1MSD
  • CSU: Contacts of Structural Units for 1MSD
  • Likely Quarternary Molecular Structure file(s) for 1MSD
  • Retrieve 1MSD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MSD from S2C, [Save to disk]
    • View 1MSD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MSD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MSD, from MSDmotif at EBI
  • Genome occurence of 1MSD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1msda1, region A:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1msda2, region A:84-198 [Jmol] [rasmolscript] [script source]
        - Domain d1msdb1, region B:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1msdb2, region B:84-198 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1msd_B] [1msd] [1msd_A]
  • SWISS-PROT database: [P04179]
  • Domain organization of [SODM_HUMAN] by SWISSPFAM
    • Other resources with information on 1MSD
  • Community annotation for 1MSD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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