1MV1 Rna date Sep 24, 2002
title The Tandem, Sheared Pa Pairs In 5'(Rggcpagccu)2
authors B.M.Znosko, M.E.Burkard, T.R.Krugh, D.H.Turner
compound source
Molecule: 5'-R(Gpgpcp(P5p)Papgpcpcpu)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
ligand P5P enzyme
Primary referenceMolecular recognition in purine-rich internal loops: thermodynamic, structural, and dynamic consequences of purine for adenine substitutions in 5'(rGGCAAGCCU)2., Znosko BM, Burkard ME, Krugh TR, Turner DH, Biochemistry 2002 Dec 17;41(50):14978-87. PMID:12475247
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1mv1.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1MV1
  • CSU: Contacts of Structural Units for 1MV1
  • Original NMR restraints for 1MV1 from PDB
  • Retrieve 1MV1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MV1 from S2C, [Save to disk]
    • View 1MV1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MV1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MV1, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mv1_B] [1mv1_A] [1mv1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1MV1
  • Community annotation for 1MV1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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