1MYW	Luminescent Protein	date	Oct 04, 2002
title	Crystal Structure Of A Yellow Fluorescent Protein With Impro Maturation And Reduced Environmental Sensitivity
authors	A.Rekas, J.R.Alattia, T.Nagai, A.Miyawaki, M.Ikura
compound		source
Molecule: Green Fluorescent Protein Chain: A Fragment: Residues 2-230 Engineered: Yes Mutation: Yes Other_details: Seyfp-F46l Variant		Organism_scientific: Aequorea Victoria Organism_taxid: 6100 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prset_b
symmetry	Space Group: P 31 1 2	R_factor 0.218 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.704 82.704 72.555 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CR2	enzyme
related structures	by homologous chain: 1C4F, 1HUY
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of venus, a yellow fluorescent protein with improved maturation and reduced environmental sensitivity., Rekas A, Alattia JR, Nagai T, Miyawaki A, Ikura M, J Biol Chem 2002 Dec 27;277(52):50573-8. Epub 2002 Oct 4. PMID:12370172

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (1myw.pdb1.gz) 76 Kb LPC: Ligand-Protein Contacts for 1MYW CSU: Contacts of Structural Units for 1MYW Likely Quarternary Molecular Structure file(s) for 1MYW Retrieve 1MYW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MYW from S2C, [Save to disk]

View 1MYW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MYW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MYW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mywa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1myw_A] [1myw] SWISS-PROT database: [P42212] Domain organization of [GFP_AEQVI] by SWISSPFAM

Other resources with information on 1MYW

Community annotation for 1MYW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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