1MZ9 Storage function of COMP:the crystal structure of the coiled-coil domain in complex with vitamin D3 date
authors Stetefeld, J.
compound source
symmetry
R_factor
R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand VDY enzyme
note 1MZ9 is a representative structure
related structures by homologous chain: 1VDF
Primary referenceStorage function of cartilage oligomeric matrix protein: the crystal structure of the coiled-coil domain in complex with vitamin D(3)., Ozbek S, Engel J, Stetefeld J, EMBO J 2002 Nov 15;21(22):5960-8. PMID:12426368
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1mz9.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1MZ9
  • CSU: Contacts of Structural Units for 1MZ9
  • Likely Quarternary Molecular Structure file(s) for 1MZ9
  • Retrieve 1MZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MZ9 from S2C, [Save to disk]
  • View 1MZ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MZ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MZ9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mz9a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1mz9b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1mz9c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1mz9d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1mz9e_, region E [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mz9_A] [1mz9_B] [1mz9_D] [1mz9] [1mz9_E] [1mz9_C]
  • SWISS-PROT database: [Q9R0G6]
  • Domain organization of [COMP_MOUSE] by SWISSPFAM
  • Other resources with information on 1MZ9
  • Community annotation for 1MZ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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