1N3Z Hydrolase date Oct 30, 2002
title Crystal Structure Of The [S-Carboxyamidomethyl-Cys31, S- Carboxyamidomethyl-Cys32] Monomeric Derivative Of The Bovine Seminal Ribonuclease In The Liganded State
authors F.Sica, A.Di Fiore, A.Zagari, L.Mazzarella
compound source
Molecule: Ribonuclease, Seminal
Chain: A
Synonym: Seminal Rnase, Ribonuclease Bs-1
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.230
length a length b length c angle alpha angle beta angle gamma
70.690 28.820 67.520 90.00 119.20 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand ADN, U3P, YCM BindingDB enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1DZA, 1W4Q
  • ribonuclease A activity

  • Primary referenceThe unswapped chain of bovine seminal ribonuclease: Crystal structure of the free and liganded monomeric derivative., Sica F, Di Fiore A, Zagari A, Mazzarella L, Proteins 2003 Aug 1;52(2):263-71. PMID:12833549
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1n3z.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1N3Z
  • CSU: Contacts of Structural Units for 1N3Z
  • Likely Quarternary Molecular Structure file(s) for 1N3Z
  • Structure Factors (136 Kb)
  • Retrieve 1N3Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N3Z from S2C, [Save to disk]
  • Re-refined 1n3z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N3Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N3Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N3Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n3za_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n3z] [1n3z_A]
  • SWISS-PROT database: [P00669]
  • Domain organization of [RNS_BOVIN] by SWISSPFAM
  • Domain found in 1N3Z: [RNAse_Pc ] by SMART
  • Other resources with information on 1N3Z
  • Community annotation for 1N3Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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