1N6J Transcription Dna date Nov 11, 2002
title Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2
authors A.Han, F.Pan, J.C.Stroud, H.D.Youn, J.O.Liu, L.Chen
compound source
Molecule: 5'-D(Apgpcptpaptptptpaptpapapgpc)-3
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Gpcptptpaptpapapaptpapgpcpt)-3
Chain: D
Engineered: Yes

Synthetic: Yes

Molecule: Myocyte-Specific Enhancer Factor 2b
Chain: A, B
Fragment: Residues 2-91, Mads-Boxmef2s Domain
Synonym: Serum Response Factor-Like Protein 2, Xmef2, Rsrfr
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mef2b Or Xmef2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Calcineurin-Binding Protein Cabin 1
Chain: G
Fragment: Residues 101-132, Cabin1, Mef2-Binding Domain
Synonym: Calcineurin Inhibitor, Chain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cabin1 Or Kiaa0330
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 2 2
R_factor 0.243 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.140 70.140 151.880 90.00 90.00 90.00
method X-Ray Diffraction, 2 Modelsresolution 2.20 Å
note 1N6J is a representative structure
related structures by homologous chain: 1EGW, 1TQE
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSequence-specific recruitment of transcriptional co-repressor Cabin1 by myocyte enhancer factor-2., Han A, Pan F, Stroud JC, Youn HD, Liu JO, Chen L, Nature 2003 Apr 17;422(6933):730-4. PMID:12700764
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (1n6j.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 1N6J
  • Likely Quarternary Molecular Structure file(s) for 1N6J
  • Structure Factors (147 Kb)
  • Retrieve 1N6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N6J from S2C, [Save to disk]
  • View 1N6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N6J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N6J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n6ja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1n6jb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1n6j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n6j_G] [1n6j_D] [1n6j] [1n6j_C] [1n6j_B] [1n6j_A]
  • SWISS-PROT database: [Q9Y6J0] [Q02080]
  • Domain organization of [CABIN_HUMAN] [MEF2B_HUMAN] by SWISSPFAM
  • Domain found in 1N6J: [MADS ] by SMART
  • Other resources with information on 1N6J
  • Community annotation for 1N6J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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