1N76 Antimicrobial Protein date Nov 12, 2002
title Crystal Structure Of Human Seminal Lactoferrin At 3.4 A Reso
authors J.Kumar, W.Weber, S.Munchau, S.Yadav, S.B.Singh, K.Sarvanan, M.Par S.Sharma, P.Kaur, A.Bhushan, A.Srinivasan, C.Betzel, T.P.Singh
compound source
Molecule: Lactoferrin
Chain: A
Synonym: Lactotransferrin
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Seminal Fluid
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.052 97.507 156.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand CO3, FE, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (1n76.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 1N76
  • CSU: Contacts of Structural Units for 1N76
  • Likely Quarternary Molecular Structure file(s) for 1N76
  • Retrieve 1N76 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N76 from S2C, [Save to disk]
    • View 1N76 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1N76
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N76, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n76a1, region A:2-334 [Jmol] [rasmolscript] [script source]
        - Domain d1n76a2, region A:335-691 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n76_A] [1n76]
  • SWISS-PROT database: [P02788]
  • Domain organization of [TRFL_HUMAN] by SWISSPFAM
  • Domain found in 1N76: [TR_FER ] by SMART
    • Other resources with information on 1N76
  • Community annotation for 1N76 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science