1NCS Transcription Regulation date Feb 26, 1996
title Nmr Study Of Swi5 Zinc Finger Domain 1
authors R.N.Dutnall, D.Neuhaus, D.Rhodes
compound source
Molecule: Transcriptional Factor Swi5
Chain: A
Fragment: Zinc Finger Dna Binding Domain 1 Of Swi5
Synonym: Peptide M30f
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: T7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: T7
Expression_system_plasmid: Pet13a
Expression_system_gene: T7
Other_details: T7 Polymerase Expression System
methodSolution NMR
ligand ZN enzyme
Primary referenceThe solution structure of the first zinc finger domain of SWI5: a novel structural extension to a common fold., Dutnall RN, Neuhaus D, Rhodes D, Structure 1996 May 15;4(5):599-611. PMID:8736557
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (612 Kb) [Save to disk]
  • Biological Unit Coordinates (1ncs.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1NCS
  • CSU: Contacts of Structural Units for 1NCS
  • Original NMR restraints for 1NCS from PDB
  • Retrieve 1NCS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NCS from S2C, [Save to disk]
  • View 1NCS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NCS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NCS, from MSDmotif at EBI
  • Genome occurence of 1NCS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ncs__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ncs_A] [1ncs]
  • SWISS-PROT database: [P08153]
  • Domain organization of [SWI5_YEAST] by SWISSPFAM
  • Domain found in 1NCS: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1NCS
  • Community annotation for 1NCS at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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