1NL0	Immune System	date	Jan 06, 2003
title	Crystal Structure Of Human Factor Ix Gla Domain In Complex O Inhibitory Antibody, 10c12
authors	M.Huang, B.C.Furie, B.Furie
compound		source
Molecule: Anti-Factor Ix Antibody, 10c12, Chain L Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: 10c12 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Anti-Factor Ix Antibody, 10c12, Chain H Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: 10c12 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Factor Ix Chain: G Fragment: Gla Domain Engineered: Yes		Synthetic: Yes Other_details: The Protein Was Chemically Synthesized. The Of The Protein Is Naturally Found In Homo Sapiens.
symmetry	Space Group: C 1 2 1	R_factor 0.233 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.089 71.614 90.867 90.00 119.14 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CA, CGU, SO4	enzyme
related structures	by homologous chain: 1BJM, 1DCL, 1IGM, 1NGY, 1OM3, 1U95
Gene Ontology	Chain Function Process Component G
Primary reference	Crystal structure of the calcium-stabilized human factor IX Gla domain bound to a conformation-specific anti-factor IX antibody., Huang M, Furie BC, Furie B, J Biol Chem 2004 Apr 2;279(14):14338-46. Epub 2004 Jan 13. PMID:14722079

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk] Biological Unit Coordinates (1nl0.pdb1.gz) 76 Kb Biological Unit Coordinates (1nl0.pdb2.gz) 150 Kb LPC: Ligand-Protein Contacts for 1NL0 CSU: Contacts of Structural Units for 1NL0 Likely Quarternary Molecular Structure file(s) for 1NL0 Retrieve 1NL0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NL0 from S2C, [Save to disk]

View 1NL0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NL0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NL0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nl0g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1nl0h1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1nl0h2, region H:114-217 [Jmol] [rasmolscript] [script source]     - Domain d1nl0l1, region L:1-108 [Jmol] [rasmolscript] [script source]     - Domain d1nl0l2, region L:109-210 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nl0_G] [1nl0] [1nl0_H] [1nl0_L] SWISS-PROT database: [P00740] Domain organization of [FA9_HUMAN] by SWISSPFAM Domains found in 1NL0: [GLA] [IG_like] [IGv ] by SMART

Other resources with information on 1NL0

Community annotation for 1NL0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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