1NMB Complex (Hydrolase Immunoglobulin) date Jan 17, 1995
title The Structure Of A Complex Between The Nc10 Antibody And Inf Virus Neuraminidase And Comparison With The Overlapping Bin Of The Nc41 Antibody
authors R.L.Malby, W.R.Tulip, P.M.Colman
compound source
Molecule: N9 Neuraminidase
Chain: N
Ec: 3.2.1.18
Mutation: Yes
Organism_scientific: Influenza A Virus
Organism_taxid: 11320

Molecule: Fab Nc10
Chain: L
Other_details: Resolution Of 2.5 Angstroms

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Isolated From Monoclonal Murine Antibody

Molecule: Fab Nc10
Chain: H
Other_details: Resolution Of 2.5 Angstroms

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Isolated From Monoclonal Murine Antibody
symmetry Space Group: I 4 2 2
R_factor 0.210 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.400 169.400 156.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand BMA, CA, MAN, NAG enzyme Hydrolase E.C.3.2.1.18 BRENDA
related structures by homologous chain: 1A14, 1AD0, 1NCC, 2JEL
Gene
Ontology
ChainFunctionProcessComponent
N


Primary referenceThe structure of a complex between the NC10 antibody and influenza virus neuraminidase and comparison with the overlapping binding site of the NC41 antibody., Malby RL, Tulip WR, Harley VR, McKimm-Breschkin JL, Laver WG, Webster RG, Colman PM, Structure 1994 Aug 15;2(8):733-46. PMID:7994573
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (1nmb.pdb1.gz) 387 Kb
  • LPC: Ligand-Protein Contacts for 1NMB
  • CSU: Contacts of Structural Units for 1NMB
  • Likely Quarternary Molecular Structure file(s) for 1NMB
  • Retrieve 1NMB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NMB from S2C, [Save to disk]
  • View 1NMB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NMB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NMB, from MSDmotif at EBI
  • Genome occurence of 1NMB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nmbh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1nmbl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1nmbn_, region N [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nmb_N] [1nmb] [1nmb_L] [1nmb_H]
  • SWISS-PROT database: [P05803]
  • Domain organization of [NRAM_I84A1] by SWISSPFAM
  • Domain found in 1NMB: [IGv ] by SMART
  • Other resources with information on 1NMB
  • Community annotation for 1NMB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1NMB from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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