1NTG	Ligase	date	Jan 29, 2003
title	Crystal Structure Of The Emap II-Like Cytokine Released From Tyrosyl-Trna Synthetase
authors	X.L.Yang, R.J.Skene, D.E.Mcree, P.Schimmel
compound		source
Molecule: Tyrosyl-Trna Synthetase Chain: A, B, C, D Fragment: C-Tyrrs Synonym: Tyrrs Ec: 6.1.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Yars Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet20b
symmetry	Space Group: P 1	R_factor 0.251 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.621 59.515 71.591 103.51 109.95 101.52
method	X-Ray Diffraction	resolution	2.21 Å
ligand		enzyme	Ligase E.C.6.1.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (1ntg.pdb1.gz) 29 Kb Biological Unit Coordinates (1ntg.pdb2.gz) 29 Kb Biological Unit Coordinates (1ntg.pdb3.gz) 29 Kb Biological Unit Coordinates (1ntg.pdb4.gz) 29 Kb CSU: Contacts of Structural Units for 1NTG Likely Quarternary Molecular Structure file(s) for 1NTG Structure Factors (585 Kb) Retrieve 1NTG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NTG from S2C, [Save to disk] Re-refined 1ntg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1NTG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NTG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NTG, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ntga_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ntgb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1ntgc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1ntgd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ntg_A] [1ntg_B] [1ntg] [1ntg_C] [1ntg_D] SWISS-PROT database: [P54577] Domain organization of [SYYC_HUMAN] by SWISSPFAM

Other resources with information on 1NTG

Community annotation for 1NTG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---