1O33 Hydrolase date Mar 06, 2003
title Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating B Active Site-Directed Serine Protease Inhibitors
authors B.A.Katz, K.Elrod, E.Verner, R.L.Mackman, C.Luong, W.D.Shrader, M. J.R.Spencer, P.A.Sprengeler, A.Kolesnikov, V.W.Tai, H.C.Hui, J.G.Breitenbucher, D.Allen, J.W.Janc
compound source
Molecule: Beta-Trypsin
Chain: A
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.780 63.380 69.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.46 Å
ligand 801, CA, CL enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1O2X, 1O37
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceElaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors., Katz BA, Elrod K, Verner E, Mackman RL, Luong C, Shrader WD, Sendzik M, Spencer JR, Sprengeler PA, Kolesnikov A, Tai VW, Hui HC, Breitenbucher JG, Allen D, Janc JW, J Mol Biol 2003 May 23;329(1):93-120. PMID:12742021
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1o33.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1O33
  • CSU: Contacts of Structural Units for 1O33
  • Likely Quarternary Molecular Structure file(s) for 1O33
  • Structure Factors (248 Kb)
  • Retrieve 1O33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O33 from S2C, [Save to disk]
  • Re-refined 1o33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O33
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1O33 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O33, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o33a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1o33 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o33_A] [1o33]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1O33: [Tryp_SPc ] by SMART
  • Other resources with information on 1O33
  • Community annotation for 1O33 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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