1O5U	Crystal structure of a duf861 family protein (tm1112) from thermotoga maritima at 1.83 A resolution	date
authors	JCSG, Joint.Center.for.Structural.Genomics.
compound		source
symmetry		R_factor R_Free 0.22239
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.83
ligand	UNL	enzyme
related structures	by homologous chain: 1LKN
Primary reference	Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from the cupin family at 1.83 A resolution., McMullan D, Schwarzenbacher R, Jaroszewski L, von Delft F, Klock HE, Vincent J, Quijano K, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Koesema E, Kreusch A, Kuhn P, Levin I, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Reyes R, Rezezadeh F, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Lesley SA, Wilson IA, Proteins 2004 Aug 15;56(3):615-8. PMID:15229894

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (1o5u.pdb1.gz) 19 Kb Biological Unit Coordinates (1o5u.pdb2.gz) 19 Kb LPC: Ligand-Protein Contacts for 1O5U CSU: Contacts of Structural Units for 1O5U Likely Quarternary Molecular Structure file(s) for 1O5U Structure Factors (147 Kb) Retrieve 1O5U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1O5U from S2C, [Save to disk] Re-refined 1o5u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1O5U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1O5U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1O5U, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1o5ua_, region A [Jmol] [rasmolscript] [script source]     - Domain d1o5ub_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1o5u] [1o5u_A] [1o5u_B] SWISS-PROT database: [Q9X0J6] Domain organization of [Q9X0J6_THEMA] by SWISSPFAM

Other resources with information on 1O5U

Community annotation for 1O5U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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