1O78 Biotin carboxyl carrier domain of transcarboxylase (1.3S) [10-48] deletion mutant date
authors Jank, M.M., Sadowsky, J.D., Peikert, C., Berger, S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
related structures by homologous chain: 1DCZ
Primary referenceNMR studies on the solution structure of a deletion mutant of the transcarboxylase biotin carrier subunit., Jank MM, Sadowsky JD, Peikert C, Berger S, Int J Biol Macromol 2002 Oct 1;30(5):233-42. PMID:12297230
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (410 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1O78
  • Original NMR restraints for 1O78 from PDB
  • Retrieve 1O78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O78 from S2C, [Save to disk]
  • View 1O78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O78
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O78, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o78a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1o78 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o78_A] [1o78]
  • SWISS-PROT database: [P02904]
  • Domain organization of [BCCP_PROFR] by SWISSPFAM
  • Other resources with information on 1O78
  • Community annotation for 1O78 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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