1O9D Protein-Binding date Dec 12, 2002
title Structural View Of A Fungal Toxin Acting On A 14-3-3 Regulatory Complex
authors M.Wurtele, C.Jelich-Ottmann, A.Wittinghofer, C.Oecking
compound source
Molecule: 14-3-3-Like Protein C
Chain: A
Engineered: Yes
Other_details: Gene Bank Aac49892
Organism_scientific: Nicotiana Tabacum
Organism_common: Common Tobacco
Organism_taxid: 4097
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Plasma Membrane H+ Atpase
Chain: P
Fragment: Residues 436-440

Synthetic: Yes
Organism_scientific: Nicotiana Plumbaginifolia
Organism_taxid: 4092
symmetry Space Group: P 65 2 2
R_factor 0.210 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.126 110.126 136.464 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.3 Å
ligand TPO enzyme
related structures by homologous chain: 1QJA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural view of a fungal toxin acting on a 14-3-3 regulatory complex., Wurtele M, Jelich-Ottmann C, Wittinghofer A, Oecking C, EMBO J 2003 Mar 3;22(5):987-94. PMID:12606564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1o9d.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 1O9D
  • CSU: Contacts of Structural Units for 1O9D
  • Likely Quarternary Molecular Structure file(s) for 1O9D
  • Structure Factors (179 Kb)
  • Retrieve 1O9D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O9D from S2C, [Save to disk]
  • Re-refined 1o9d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O9D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O9D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O9D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o9da_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1o9d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o9d] [1o9d_A] [1o9d_P]
  • SWISS-PROT database: [P93343] [Q40409]
  • Domain organization of [1433C_TOBAC] [Q40409_NICPL] by SWISSPFAM
  • Domain found in 1O9D: [14_3_3 ] by SMART
  • Other resources with information on 1O9D
  • Community annotation for 1O9D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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