1OB6 Antibiotic date Jan 24, 2003
title Cephaibol B
authors G.Bunkoczi, M.Schiell, L.Vertesy, G.M.Sheldrick
compound source
Molecule: Cephaibol B
Chain: A, B
Organism_scientific: Acremonium Tubakii
Organism_taxid: 146077
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.146 9.126 37.982 90.00 111.36 90.00
method X-Ray Diffractionresolution 0.89 Å
ligand ACE, ACT, AIB, DIV, EOH, HYP, PHL enzyme
Primary referenceCrystal structures of cephaibols., Bunkoczi G, Schiell M, Vertesy L, Sheldrick GM, J Pept Sci 2003 Nov-Dec;9(11-12):745-52. PMID:14658793
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1ob6.pdb1.gz) 8 Kb
  • Biological Unit Coordinates (1ob6.pdb2.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 1OB6
  • CSU: Contacts of Structural Units for 1OB6
  • Likely Quarternary Molecular Structure file(s) for 1OB6
  • Structure Factors (245 Kb)
  • Retrieve 1OB6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OB6 from S2C, [Save to disk]
  • Re-refined 1ob6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OB6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OB6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1OB6 1OB6A 1OB6B from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OB6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ob6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ob6b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1ob6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ob6_A] [1ob6] [1ob6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1OB6
  • Community annotation for 1OB6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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