1OC2	Lyase	date	Feb 04, 2003
title	The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase (Rml
authors	K.Beis, J.H.Naismith
compound		source
Molecule: Dtdp-Glucose 4,6-Dehydratase Chain: A, B Ec: 4.2.1.46 Engineered: Yes		Organism_scientific: Streptococcus Suis Organism_taxid: 1307 Strain: Serotype 2 Cell_line: Bl21de3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21(+)
symmetry	Space Group: P 21 21 21	R_factor 0.170 R_Free 0.200
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.410 94.829 183.543 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	NAD, SO4, TDX	enzyme	Lyase E.C.4.2.1.46 BRENDA
related structures	by homologous chain: 1KEP
Gene Ontology	Chain Function Process Component A, B
Primary reference	The structure of NADH in the enzyme dTDP-d-glucose dehydratase (RmlB)., Beis K, Allard ST, Hegeman AD, Murshudov G, Philp D, Naismith JH, J Am Chem Soc 2003 Oct 1;125(39):11872-8. PMID:14505409

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk] Biological Unit Coordinates (1oc2.pdb1.gz) 250 Kb LPC: Ligand-Protein Contacts for 1OC2 CSU: Contacts of Structural Units for 1OC2 Likely Quarternary Molecular Structure file(s) for 1OC2 Structure Factors (2519 Kb) Retrieve 1OC2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OC2 from S2C, [Save to disk] Re-refined 1oc2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OC2 in 3D

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Visual 3D analysis of 1OC2

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1OC2 1OC2A 1OC2B from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OC2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1oc2a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1oc2b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1m1oc2, region C:269-392 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1oc2] [1oc2_A] [1oc2_B] SWISS-PROT database: [Q8GIP9] Domain organization of [Q8GIP9_STRSU] by SWISSPFAM

Other resources with information on 1OC2

Community annotation for 1OC2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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