1OG5 Electron Transport date Apr 24, 2003
title Structure Of Human Cytochrome P450 Cyp2c9
authors P.A.Williams, J.Cosme, A.Ward, H.C.Angove, D.Matak Vinkovic, H.Jhoti
compound source
Molecule: Cytochrome P450 2c9
Chain: A, B
Fragment: Soluble Domain, Residues 30-490
Synonym: (R)-Limonene 6-Monooxygenase, (S)-Limonene 6-Monoo (S)-Limonene 7-Monooxygenase, Cypiic9, Cytochrome P-450mp, Cytochrome P450 Mp-4, Cytochrome P450 Mp-8, Cytochrome P450 S-Mephenytoin 4-Hydroxylase;
Ec: 1.14.13.80, 1.14.13.48, 1.14.13.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1 Blue
Expression_system_vector: Pcwori+
symmetry Space Group: P 3 2 1
R_factor 0.2247 R_Free 0.2565
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.757 164.757 110.762 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.55 Å
ligand HEC, SWF enzyme Oxidoreductase E.C.1.14.13.80 BRENDA
related structures by homologous chain: 1N6B, 1OG2
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human cytochrome P450 2C9 with bound warfarin., Williams PA, Cosme J, Ward A, Angove HC, Matak Vinkovic D, Jhoti H, Nature 2003 Jul 24;424(6947):464-8. PMID:12861225
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (1og5.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (1og5.pdb2.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 1OG5
  • CSU: Contacts of Structural Units for 1OG5
  • Likely Quarternary Molecular Structure file(s) for 1OG5
  • Retrieve 1OG5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OG5 from S2C, [Save to disk]
  • View 1OG5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OG5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OG5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1og5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1og5b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1og5] [1og5_A] [1og5_B]
  • SWISS-PROT database: [P11712]
  • Domain organization of [CP2C9_HUMAN] by SWISSPFAM
  • Other resources with information on 1OG5
  • Community annotation for 1OG5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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