1OHM Antibiotic date May 28, 2003
title Sakacin P Variant That Is Structurally Stabilized By An Inserted C-Terminal Disulfide Bridge.
authors M.Uteng, H.H.Hauge, P.R.Markwick, G.Fimland, D.Mantzilas, J.Nissen-Meyer, C.Muhle-Goll
compound source
Molecule: Bacteriocin Sakacin P
Chain: A
Synonym: Sakacin 674
Engineered: Yes
Mutation: Yes
Other_details: Sakacin P Variant That Is Structurally Stabilized By An Inserted C-Terminal Disulfide Bridge.
Organism_scientific: Lactobacillus Sake
Organism_taxid: 1599
Strain: Lb790
Variant: Lb790pgf10
Expression_system: Lactobacillus Sake
Expression_system_taxid: 1599
Expression_system_strain: Lb790
Expression_system_variant: Lb790pgf10
Expression_system_vector: Pmg36e
Expression_system_plasmid: Pgf10
methodSolution NMR
related structures by homologous chain: 1OG7, 1OHN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure in lipid micelles of the pediocin-like antimicrobial peptide sakacin P and a sakacin P variant that is structurally stabilized by an inserted C-terminal disulfide bridge., Uteng M, Hauge HH, Markwick PR, Fimland G, Mantzilas D, Nissen-Meyer J, Muhle-Goll C, Biochemistry 2003 Oct 7;42(39):11417-26. PMID:14516192
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1OHM
  • Original NMR restraints for 1OHM from PDB
  • Retrieve 1OHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OHM from S2C, [Save to disk]
  • View 1OHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OHM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OHM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ohma_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ohm_A] [1ohm]
  • SWISS-PROT database: [P35618]
  • Belongs to the pediocin (pediocin) family according to TCDB.
  • Domain organization of [SAKP_LACSK] by SWISSPFAM
  • Other resources with information on 1OHM
  • Community annotation for 1OHM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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