1OHR VIRACEPT (R) (NELFINAVIR MESYLATE, AG1343): A POTENT ORALLY BIOAVAILABLE INHIBITOR OF HIV-1 PROTEASE date
authors II, J.F.Davies.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand 1UN BindingDB enzyme
note 1OHR (Molecule of the Month:pdb6)
related structures by homologous chain: 1EC1, 1LV1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceViracept (nelfinavir mesylate, AG1343): a potent, orally bioavailable inhibitor of HIV-1 protease., Kaldor SW, Kalish VJ, Davies JF 2nd, Shetty BV, Fritz JE, Appelt K, Burgess JA, Campanale KM, Chirgadze NY, Clawson DK, Dressman BA, Hatch SD, Khalil DA, Kosa MB, Lubbehusen PP, Muesing MA, Patick AK, Reich SH, Su KS, Tatlock JH, J Med Chem 1997 Nov 21;40(24):3979-85. PMID:9397180
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1ohr.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1OHR
  • CSU: Contacts of Structural Units for 1OHR
  • Likely Quarternary Molecular Structure file(s) for 1OHR
  • Retrieve 1OHR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OHR from S2C, [Save to disk]
  • View 1OHR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OHR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OHR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ohra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ohrb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ohr_B] [1ohr] [1ohr_A]
  • SWISS-PROT database: [Q9Q288]
  • Domain organization of [Q9Q288_9HIV1] by SWISSPFAM
  • Other resources with information on 1OHR
  • Community annotation for 1OHR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1OHR from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science