1OIR Kinase date Jun 24, 2003
title Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation
authors J.F.Beattie, G.A.Breault, K.F.Byth, J.D.Culshaw, R.P.A.Ellston, S.Green, C.A.Minshull, R.A.Norman, R.A.Pauptit, A.P.Thomas, P.J.Jewsbury
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.529 72.239 72.137 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand HDY, KCX enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1E1V, 2BHE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceImidazo[1,2-a]pyridines: a potent and selective class of cyclin-dependent kinase inhibitors identified through structure-based hybridisation., Anderson M, Beattie JF, Breault GA, Breed J, Byth KF, Culshaw JD, Ellston RP, Green S, Minshull CA, Norman RA, Pauptit RA, Stanway J, Thomas AP, Jewsbury PJ, Bioorg Med Chem Lett 2003 Sep 15;13(18):3021-6. PMID:12941325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1oir.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1OIR
  • CSU: Contacts of Structural Units for 1OIR
  • Likely Quarternary Molecular Structure file(s) for 1OIR
  • Structure Factors (139 Kb)
  • Retrieve 1OIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OIR from S2C, [Save to disk]
  • Re-refined 1oir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OIR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OIR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oira_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1oir from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oir_A] [1oir]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1OIR: [S_TKc ] by SMART
  • Other resources with information on 1OIR
  • Community annotation for 1OIR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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