1OJD	Oxidoreductase	date	Jul 08, 2003
title	Human Monoamine Oxidase B In Complex With Lauryldimethylamin (Ldao)
authors	C.Binda, D.E.Edmondson, A.Mattevi
compound		source
Molecule: Amine Oxidase [Flavin-Containing] B Chain: A, B, C, D, E, F, G, H, I, L Synonym: Monoamine Oxidase, Mao-B Ec: 1.4.3.4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Pichia Pastoris Expression_system_taxid: 4922
symmetry	Space Group: P 1	R_factor 0.252 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.405 132.431 154.838 90.14 90.45 114.02
method	X-Ray Diffraction	resolution	3.10 Å
ligand	FAD, LDA	enzyme	Oxidoreductase E.C.1.4.3.4 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, I, G, L electron transfer activity
Primary reference	Insights into the mode of inhibition of human mitochondrial monoamine oxidase B from high-resolution crystal structures., Binda C, Li M, Hubalek F, Restelli N, Edmondson DE, Mattevi A, Proc Natl Acad Sci U S A 2003 Aug 19;100(17):9750-5. Epub 2003 Aug 11. PMID:12913124

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (796 Kb) [Save to disk] Biological Unit Coordinates (1ojd.pdb1.gz) 165 Kb Biological Unit Coordinates (1ojd.pdb2.gz) 167 Kb Biological Unit Coordinates (1ojd.pdb3.gz) 166 Kb Biological Unit Coordinates (1ojd.pdb4.gz) 167 Kb Biological Unit Coordinates (1ojd.pdb5.gz) 166 Kb LPC: Ligand-Protein Contacts for 1OJD CSU: Contacts of Structural Units for 1OJD Likely Quarternary Molecular Structure file(s) for 1OJD Structure Factors (1030 Kb) Retrieve 1OJD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OJD from S2C, [Save to disk] Re-refined 1ojd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OJD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OJD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OJD, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ojda2, region A:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojda1, region A:4-289,A:402-500 [Jmol] [rasmolscript] [script source]     - Domain d1ojdb2, region B:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojdb1, region B:4-289,B:402-497 [Jmol] [rasmolscript] [script source]     - Domain d1ojdc2, region C:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojdc1, region C:4-289,C:402-501 [Jmol] [rasmolscript] [script source]     - Domain d1ojdd2, region D:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojdd1, region D:4-289,D:402-497 [Jmol] [rasmolscript] [script source]     - Domain d1ojde2, region E:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojde1, region E:4-289,E:402-501 [Jmol] [rasmolscript] [script source]     - Domain d1ojdf2, region F:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojdf1, region F:4-289,F:402-500 [Jmol] [rasmolscript] [script source]     - Domain d1ojdg2, region G:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojdg1, region G:4-289,G:402-497 [Jmol] [rasmolscript] [script source]     - Domain d1ojdh2, region H:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojdh1, region H:4-289,H:402-501 [Jmol] [rasmolscript] [script source]     - Domain d1ojdi2, region I:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojdi1, region I:4-289,I:402-500 [Jmol] [rasmolscript] [script source]     - Domain d1ojdl2, region L:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojdl1, region L:4-289,L:402-500 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ojd_E] [1ojd_B] [1ojd_H] [1ojd_D] [1ojd] [1ojd_G] [1ojd_C] [1ojd_F] [1ojd_A] [1ojd_L] [1ojd_I] SWISS-PROT database: [P27338] Domain organization of [AOFB_HUMAN] by SWISSPFAM

Other resources with information on 1OJD

Community annotation for 1OJD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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